Luca Stefanucci

problem with gunzipped vcf.gz

3

Hi Fritz, I have a few thousands of vcf.gz, one per sample. They all have SV called with manta and I'd like to merge them. I saw I can't use...

multiple SNP in non-coding regions

1

Dear Brent, I'd like to use slivar to look for multiple SNPs co-occurring in a few defined non-coding spaces. I have an aggregate vcf file that has several samples and...

Calculate gene similarity on the HPO

2

Dear Kevin, I would like to calculate the similarity for a few genes (~2000). I annotated these genes with the HPO codes from the human phenotype ontology webpage (http://compbio.charite.de/jenkins/job/hpo.annotations/lastSuccessfulBuild/artifact/util/annotation/genes_to_phenotype.txt). I...