Jan Stanstrup

Does not respect space = "free" in facet_grid

11

``` mt

tip_length in aes

5

Would it be possible to set the tip_length in the `aes`? I am working on some time series data. So making a custom dataframe with the annotations could be nice....

I think I have finally nailed down an issue that have been hauting me for years. It turns out that if you use ```yaml bookdown::gitbook: split_by: rmd ``` Then inline...

There is `selectRows` to change the selected rows. It would be convenient to be able to update also what is `selectedable`. --- By filing an issue to this repo, I...

Implement a as( XCMSnExp) for xcmsSet

2

I know the reverse exist but any chance to convert xcmsSet to XCMSnExp? I have an mzMine peaklist I need to process. I have an old `mzmine2xcmsSet` function but need...

Orbitrap shoulder filter

15

Hi, It would be nice to have build-in support to filter orbitrap artifacts at some point. I have written a filter but ATM it needs to be used to convert...

Make 2D separation possible

14

Just putting as a reminder here since a lot of re-modelling seems to be going on. While you consider how to re-organize XCMS please consider making it possible to use...

I was trying out Massifquant and grouping failed for me. I traced that back to the peak matrix containing NA for some rt values. That in turn causes the [rtrange](https://github.com/sneumann/xcms/blob/2180f6144a615911a53acf66525f50005d2beacc/R/do_groupChromPeaks-functions.R#L117)...

[colorlabels branch]: RowSideColors and ColSideColors gives black on invalid color (also alpha)

1

Using the colorlabels branch RowSideColors and ColSideColors gives black on invalid color. Seems putting an alpha level is also invalid. ``` R d3heatmap(mtcars, scale = "column", colors = "Blues",RowSideColors=heat.colors(nrow(mtcars)),ColSideColors=rainbow(ncol(mtcars))) ```...

large matrices cannot be opened in any browser

3

I know this is not really a bug but I was hoping there would be some solution. I am trying to visualized a 1500x1500 correlation matrix. R crashes if I...