Sergey Vassiliev

problem with the combine_annotations step

2

Hi! I am trying to run DRAM2 on an HPC cluster using the singularity_slurm profile. The COMBINE_ANNOTATIONS step fails because the file .._sql_formatted_viral_hits.csv created at the previous stage SQL_VIRAL cannot...

Question: Support for creating host Conda environments using container Conda

1

Hi Snakemake team, I’m trying to run a workflow that uses conda environments on a host that does not have Conda installed, using --use-apptainer with a container that does have...