Bogdan

fastqt command line does not work: QXcbConnection: Could not connect to display

7

When trying to run fastqt 0.2.3 in a screen session over ssh connection to a remote host, the following error is displayed: ``` QXcbConnection: Could not connect to display Aborted...

Question: `clip` vc `clip-nanopore`?

2

I have a dazzler database with a combination of PacBio and Nanopore reads. Which of the `clip` options is more suitable in this case? Thank you in advance :)

`funannotate clean`: proper tmp files

3

I had issues with `funannotate clean` when running several genomes in parallel - both locally and when submitting to an HPC. This PR fixes both local parallel execution and HPC...

question: how to match the same `.chkbitignore` files at different depth levels?

4

I'm struggling with a line definition in `.chkbitignore` that would, for example, match all `Thumbs.db` files independent of where they are in the file tree. I've tried just the name...

Let docker know that we expose a service on port 5022.

I'm getting the same error as in #56 running on Ubuntu 22.04 locally. Installing `zx-utils` fixes #56.

Dockerfile: there is no python anymore, use python3

1

`python` is not a valid package name anymore, thus explicitly using `python3` fixes #60

When building the image locally, got this error: ``` Step 19/61 : RUN apt-get -y install python build-essential libglib2.0-dev libpixman-1-dev ninja-build ---> Running in d3817f7d3c0a Reading package lists... Building dependency...

question: `tqdm` progress display keeps lines on the screen

3

For all operations, there is a nice `tqdm` progress shown, but at least for me each update is printed as a new, separate line, instead of overwriting the same line...

Non latin-1 filenames are not supported

5

Thank you for a very thought-out tool! Currently evaluating it for keeping my 400+GB, 50k-file archive safe(r). While doing so, came across this exception: ```python Traceback (most recent call last):...