Sara Patti

Error in if (ncol(m)) { : argument is of length zero

8

Hi! I commented on an enhancement in issues as I originally thought it might be an issue of my spatial experiment, however I'm wondering if this is a separate issue....

The Kernel crashed while executing code in the current cell

3

Hi! Thanks for writing Squidpy! Its really amazing! I'm running into an issue and I'm not sure if its an issue with squidpy itself or how I'm running the code...

Hi, I would really like to try to use this method on my Xenium spatial transcriptomics data that I've pre-processed with squidpy, however Im running into some issues. Here is...

Hi! Really interested in trying to use MISTy for some IMC and single cell resolution spatial transcriptomics data. I saw in the paper that you analyzed very similar data types...

### Please make sure these conditions are met - [x] I have checked that this issue has not already been reported. - [x] I have confirmed this bug exists on...

**Describe the bug** UnboundLocalError: local variable 'DataLoader' referenced before assignment **To Reproduce** Steps to reproduce the behavior: Run tutorial of analysis_tutorial_mibitof_cancer.ipynb **Expected behavior** As seen in tutorial **System [please complete...

Xenium 5k cannot be imported because of mismatch in morphology naming

4

Issue: I am trying to load a xenium file from the output from the machine using sdata `sdata = xenium(xenium_path)`. It seems the xenium function expects the morpology names to...