Irem Altan

Hi, As far as I can see, the only documentation for the C API is for `v1.1.2`. There seem to be key differences between these two versions, notably the two...

mmseqs easy-search with .fasta files dies without a descriptive error message

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## Expected Behavior Completion to provide output file. ## Current Behavior It dies with the following message: `Target database size: 460882 type: Nucleotide tmp/288148333766582684/search_tmp/3592684985880184946/blastp.sh: line 99: 141854 Killed $RUNNER "$MMSEQS"...

I need the "external applications" to run stuff from the command line, but I don't want to use conda. It says I should manually compile from etetoolkit/ete_toolchain, but that repo...

Does not launch after installing with pip on windows11

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### Provide environment information ``` (labelme_env) PS C:\Users\irema> python --version Python 3.12.9 (labelme_env) PS C:\Users\irema> python -m pip list Package Version ------------------ ----------- annotated-types 0.7.0 beautifulsoup4 4.13.3 certifi 2025.1.31 charset-normalizer...

Python version requirements cannot be satisfied with miniconda

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### Description of bug I have a fresh ubuntu install, with miniconda (`conda 25.3.1`). I'm creating a new environment, and I already have the channel order set: ``` $ cat...

Duplicate % is way higher than what fastqc estimates and what I manually calculate

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I have a `.fastq` file with 225358 sequences. When I remove duplicates with a python script, I get 209438. This corresponds to a duplication rate of 7.06%, which is also...