Nathan Baker issues

Results 62 issues of


                                            Nathan Baker

Start date sorting

Support start date sorting. Uses the "t" metadata key for start date (e.g., "t:2017-11-23") as implemented by Simpletask (https://github.com/mpcjanssen/simpletask-android).

Mac OS X makes static linking difficult

Unfortunately, this still seems to be an issue in the 3.4.1 release. ``` Performing C SOURCE FILE Test Intl_IS_BUILT_IN failed with the following output: Change Dir: /tmp/apbs-20220926-39068-n0ircz/build/CMakeFiles/CMakeTmp Run Build Command(s):/opt/homebrew/bin/gmake...

Docker build fails

``` #6 348.0 --2022-08-06 22:48:51-- http://glaros.dtc.umn.edu/gkhome/fetch/sw/metis/metis-5.1.0.tar.gz #6 348.0 Resolving glaros.dtc.umn.edu (glaros.dtc.umn.edu)... 160.94.40.33 #6 348.3 Connecting to glaros.dtc.umn.edu (glaros.dtc.umn.edu)|160.94.40.33|:80... failed: Connection refused. ------ executor failed running [/bin/sh -c apt-get update &&...

Zero-radius atoms should not contribute to molecular surface

Hello -- `srfm mol` and `srfm smol` will generate surface contributions from zero-radius atoms. They probably shouldn't do that but that's a low-priority bug to fix. What are you trying...

Debye length output should say "undefined" (or not be listed) at zero ionic strength

Hi @rwxayheee -- The [Debye length](https://en.wikipedia.org/wiki/Debye_length) isn't defined at zero ionic strength so I just had the output report "0". This should probably be "infinite" or "undefined" instead. In general,...

API docs are not being built

There's plenty of documentation (e.g., https://github.com/Electrostatics/apbs/blob/master/apbs/input_file/read.py) but ReadTheDocs isn't building it (https://apbs.readthedocs.io/en/latest/api/index.html#module-apbs). The documentation builds fine locally in Sphinx.

Double check pytest raises vs. xfail

@intendo can you please check your past tests for the use of `pytest.raises` vs. `pytest.mark.xfail`? I'd like to follow https://docs.pytest.org/en/6.2.x/assert.html#assertions-about-expected-exceptions and only use `xfail` for things we need to fix....

Nathan Baker