Ismail Naderi

Next Omegafold

3

Is there a time for when the next Omegafold is going to be released?

Model 2 subbatch_size not working

3

Hi I'm trying to inference a sequence with length 548 on an A10 GPU with model 2 I tried subbatch size equal to 1 but GRAM is low and it...

How to make foldseek use less memory?

3

I'm trying to run foldseek on Uniprot , it keeps crashing due o memory. Is there anyway to define a limit on memory or reduce memory consumption? Thanks

ValueError("All arrays must be of the same length")

4

## Bug Description I tried to run it on the following fasta file it gives me this error: ```fasta >seq-2 MKKKKKKKLKKLKKKLKKKLKKKKKLLLLLLLLKKKKKKK >seq-9 MKKKIKKIKKKIEKKKKKKLKKLKKKKKKKKLLLLLLLLL >seq-10 MSEKFSEIAEKYDEERILSRSAGELAELTRELGLKPGDRVLDVGCGTGYLTLPLAERVGPEGTVIGIDRSEEMLARARERAAAAGLSNVEFQVADAEALPFPDESFDLVTCRLVLHHLPDPAKALREMRRVLKPGGRFVVSDWDASSMAFPDEEAELAERLRRYAEARAAAGGERDALRRALEAAGFRDVTVRSLTAWRRRAGEAAAAAL >seq-13 MKKKKKLKKKLKKKKKKKK ``` ## Runtime...

How to get score when run unidock tooks?

4

When I use unidock tools I only get output ligand. How I can get score?

Can't find exact match in PDB

2

Hi I'm using foldseek easy search to find a pdb in PDB100. On webserver it finds exact match with prob100. But when I do in on my side it does...

Docker to run it

9

is there a docker to use it? the script installation fails for me