CWang_ecoevo

Hi dear developers, It may be a very easy question but I couldn't find a perfect answer so far: is it possible to get a purely clean google map, which...

Hi, I was using puge haplotig, and in that work flow the first step was to use bedtools genomecov so I moved here. I have three paired end dataset, illumina...

Is the singularity installation up to date?

3

Hi, I installed the singularity container on a server, and the function --version, and dmd doesn't work. ALso when I try to run mcl analysis, it constantly complains cds file...

augustus.hints.gtf has 25k genes more than braker.gtf

1

Hi, I was running braker3 with etp mode, and get the final braker.gtf file. Compared to the Augustus/augustus.hints.gtf which predicted 68857 genes, the final braker.gtf preserved only 39896 genes. The...

what is the "per set sequence lengths"

5

Hi, I am not so clear from the manual about "per set sequence lengths". Is it about the target genome or the query sequence? I am comparing two genome assembly...

scatterpie shape changes with the map from ggmap

8

Hi, I have been using the scatterpie package with ggmap package, aiming to show the genetic admixture on the map, here is my code: library(tidyverse) library(ggplot2) library(ggmap) library(scatterpie) register_google(key =...