CWang_ecoevo

Results 20 comments of CWang_ecoevo

“Disentangling failed: 'Multiple isolated embplant_pt components detected! Broken or contamination?” AND the assemble length range different from reference

I encountered the same error while using the assembly done by flye. I adjusted the parameter --min-depth 100 --max-depth 3000 and it finally completed the analyses. I changed the parameters...

visualization for cafe5 output

Hi, is there update to this?

Repeat Masker Output Files

What does the last two columns in the gff mean? Are they the number of counts? Why they are different? I couldn't find the explanation anywhere. Thanks!

0 count of count_diffs and count_comparisons and all in count_missing

Same here. Did you figure out the reason? thanks, Cui

0 count of count_diffs and count_comparisons and all in count_missing

Thanks for the answers! Downgrading to pixy 1.2.5 worked for me as well! Cui

0 count of count_diffs and count_comparisons and all in count_missing

> > This is a bug, and the current solution is to roll back to pixy 1.2.5 (all calculations are unchanged relative to the current version). > > Thanks for...

0 count of count_diffs and count_comparisons and all in count_missing

> > > > This is a bug, and the current solution is to roll back to pixy 1.2.5 (all calculations are unchanged relative to the current version). > >...

Error when running prepDE.py

Hi, I am using the v2.2.3, and the problem persists. Should I switch back to 2.2.1? I m using only short reads. thanks, Cui

what is the "per set sequence lengths"

Hi Thomas, Thank you for your quick and clear explanation. I have one more question, should I follow the order that target file should be placed in the first half...

what is the "per set sequence lengths"

Hi, I made a length file as instructed, and a paf file generated in minimap2, and using minicot.R script to construct the dot, but got an error message like this:...