Samantha Zarate comments

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                                            Samantha Zarate

`get` does not work on folders

@diwakergupta FWIW, the workaround I ended up writing was effectively a recursive `dbxcli ls` that fed into `dbxcli get`. Glad this is getting some attention!

Running SVTyper on any SV tool

I have also tried running `svtyper_sso` on CNVnator and BreakSeq VCFs, and I am running into the same error.

ERROR:root:Unable to load cythonized quickconsensus module; this is likely because pysam has been updated since genomeview was originally install. To fix this, force reinstall genomeview: pip install --upgrade --force-reinstall genomeview

@nspies I have also encountered this error while trying to Dockerize svviz2. You can see my installation script here: https://raw.githubusercontent.com/slzarate/parliament2/master/docker_images/svviz/Dockerfile

ERROR:root:Unable to load cythonized quickconsensus module; this is likely because pysam has been updated since genomeview was originally install. To fix this, force reinstall genomeview: pip install --upgrade --force-reinstall genomeview

Thanks, @nspies! Congrats and best of luck!