Surya Koturan issues

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                                            Surya Koturan

Error in SAMPLEFOLDER

Hi, I have been trying to run velocyto run10x, but I keep getting this error for my sample folder: Error: Invalid value for 'SAMPLEFOLDER': Directory '~rds/.../filtered_feature_bc_matrix' does not exist. Could...

0 terms out of 50 terms loaded for current annotation file

I am encountering this message while loading the data files. I don't understand why none of the terms are loaded from the annotation file. `Data file loaded 0 terms out...

SCENIC+: pycistopic QC errors

Hi, I'm trying to run the new SCENIC+ using this tutorial: https://pycistopic.readthedocs.io/en/latest/notebooks/human_cerebellum.html When I get to the QC steps after inferring consensus peaks, `pycistopic qc` does not run. The error...