Sebastian Jaenicke

Results 15 issues of Sebastian Jaenicke

Hi there, any chance of having the database loaded into memory via mmap() so multiple diamond instances on a host could share the database?

feature request

fmt-maven-plugin has moved, see https://github.com/spotify/fmt-maven-plugin

At least these compile warnings are looking somewhat suspicious to me: ``` diff_sample.h:180:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(!diffs[d1]) diffCnt++; diffs[d1] = true; ^~ diff_sample.h:180:32: note: ...this...

After a `chart.getSeriesMap().clear();`, NoSuchElementException is thrown when attempting to draw the component: ``` java.util.NoSuchElementException at java.base/java.util.LinkedHashMap$LinkedHashIterator.nextNode(LinkedHashMap.java:758) at java.base/java.util.LinkedHashMap$LinkedValueIterator.next(LinkedHashMap.java:783) at org.knowm.xchart.internal.chartpart.Axis.getAxisTickCalculator(Axis.java:442) at org.knowm.xchart.internal.chartpart.Axis.getXAxisHeightHint(Axis.java:287) at org.knowm.xchart.internal.chartpart.Axis.preparePaint(Axis.java:155) at org.knowm.xchart.internal.chartpart.AxisPair.paint(AxisPair.java:123) at org.knowm.xchart.CategoryChart.paint(CategoryChart.java:311) at org.knowm.xchart.XChartPanel.paintComponent(XChartPanel.java:168)...

Bug

Hi, `cwltool 3.1.20230601100705` For a workflow with `cwlVersion: 1.2` and some steps only executed conditionally via `when`, cwltool successfully validates the workflow even if `InlineJavascriptRequirement` is not specified.

``` $ cwltool --version /vol/mgx-sw/bin/cwltool 3.1.20230425144158 ``` When invoked with `--tmpdir-prefix /vol/sge-tmp` (a directory), cwltool doesn't add a trailing slash, and workflow execution fails: ``` ERROR Unexpected exception Traceback (most...

``` g++ -c -O3 -std=c++14 -Isrc -I/vol/mgx-sw/src/tools/Mash/../capnproto-c++-0.10.2/include -I/vol/mgx-sw/include -include src/mash/memcpyLink.h -Wl,--wrap=memcpy -o src/mash/CommandTaxScreen.o src/mash/CommandTaxScreen.cpp In file included from src/mash/CommandTaxScreen.cpp:11: src/mash/taxdb.hpp: In member function ‘void mash::TaxDB::writeReport(FILE*, const std::unordered_map&, long unsigned int,...

Hi, on Ubuntu 20.04 LTS, I'm unable to install CheckM2 because the outdated scikit-learn fails to compile. This is with Python 3.11.2, and conda or Docker currently isn't an option...

enhancement