simroux
Right, in that case I would recommend looking into MVP https://gitlab.com/ccoclet/mvp that can also prepare DRAM input file
Hi ! Can you confirm that there were some viral sequences predicted (i.e. "global_phage_signal" is not empty ? ). Now that being said, VirSorter1 is quite outdated at this point,...
Oh right, then here's some good news: we have a new pipeline called MVP that performs geNomad + CheckV prediction, and then prepares the input file for DRAM :-) You...
Hi Yang, Yes, viral-like genes are categories 1 and 2, with 4 and 5 for genes found in non-Caudovirales (but all of these are not hallmark, i.e. they are often...
I am not sure I understand the question, but you may want to double-check the scores as well ? DPZ5_202101_spades_4293__22 and DPZ5_202101_spades_4293__25 have a hit to a profile of category...
Hi, If the question is: "what category are viral-like genes ?", then yes these are categories 1 and 4. Best, Simon