simroux

Hi Jarrod, Yes, the default is still to use the C script, it has been updated so that it should now compile and run on more modern gcc, so I...

Hi, Based on the log file, it looks like you have been trying to run VirSorter multiple times on the same directory. Could you try again with the same input...

Hi, It looks like metagene_annotator was not installed, so VirSorter could not predict proteins. Could you double check on the README that you followed the specific step after "Finally, you'll...

Dear Thierry, Could you send the log files of the VirSorter run ? There are (unfortunately) a number of reasons why the final csv would be empty, but hopefully we...

Hi Thierry, Sorry, I didn't receive any email. You can attach them to your messages here, or send them to sroux (at) lbl.gov

This seems like an issue with 2 incompatible perl installs (one from the system, one in the conda environment). Did you successfully follow the steps to add the conda folder...

Hi Ali, It seems like there is an error with the input fasta file (VirSorter complains of an empty sequence). Did you check the input file for any special character,...

VirSorter *should* be able to take multi-fasta as input for the custom phage database, what I wanted to stress out is that this custom phage database will be added to...

Hi, This typically means that one step failed, but it is hard to guess which one without more information. I should also mention that VirSorter 2 (https://github.com/jiarong/VirSorter2) is now available.

Dear Jiaojiao, I've never seen this error, but I suspect it would have only a minor impact on the results. That being said, I highly recommend updating from VirSorter1 to...