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                                            Simone

In rcstat if rowRaw.get(col[2]): IndexError: list index out of range

I'm having the same issue and this doesn't seem to be working, is there another way to generate the summary file?

getting error in summarise_rm_ID

I'm having this same issue: `Error in `[.data.table`(setDT(rm_table), , list(score = sum(score), p_sub = mean_psub(p_sub, : Supplied 2 items for column 11 of group 1570388 which has 3 rows. The...

Clarity on pipeline CLI parameters

Thank you! The HPC staff at my institution have actually been having a lot of trouble getting the pipeline to run properly so I'm going to close this for now...

Clarity on pipeline CLI parameters

Hello, The pipeline is properly running in the custom module and now I'm back to memory issues :) A few more questions- 1) Is it worthwhile to filter out smaller...

the distance maximal by default of bedtools closest -D

I'm having the same issue. I should have at least the same # of features in file A, and likely slightly more in the case of ties since I'm using...

success of all jobs

@ohdongha thanks for sharing this! Do you know where the newer version of windowmasker can be found? I can only seem to locate the binary for v1.0.0 from NCBI's toolkit.

make_lastz_chains overwriting and not resuming where it left off

Hi all, Adding here that I encountered the same problem. Removing all output from the failed step and trying to set "--cfs" just overwrites all output and starts the pipeline...