signalbash

> Simulating data from assumptions about the data generating distribution can help to debug or characterize deep learning models, and deep learning models can also simulate data in cases where...

How do you unpack a miso directory? It's not covered in the documentation

I had the same thing happen to me, and the quick fix was as you mentioned to use an older version of kallisto This seems to be the culprit: https://github.com/pachterlab/kallisto/issues/105...

I *think* this was an issue with formatting. I've edited the code to strip whitespace and it tentatively works locally on the Midas transcriptome/gtf examples you gave. https://github.com/signalbash/how_are_we_stranded_here/commit/0fedf9245c3bbbcdf670e2b374196ca5d40cab25