Cyan
Cyan
Hey, It's exciting that when I changed the mirror in conda and reset the python version, I installed samplot successfully. Now I got the images for some SVs but meanwhile...
Thank you for the reply and the tabix warning is also solved after sorting and indexing the vcf file. Thanks again for the help!
Thank you for the reply. It seemed that all the codes haven't been updated for more than half an year and I installed SV-plaudit recently. So how to get the...
When I proceed with "conda install -c bioconda samplot", the error was "UnsatisfiableError: The following specifications were found to be incompatible with each other: Output in format: Requested package ->...
I sampled only 9 bams to generate each plot.
My command is "samplot plot -t DEL -a -s -e -b 1.bam 2.bam 3.bam 4.bam 5.bam 6.bam 7.bam 8.bam 9.bam -o" and my samplot version is "samplot 1.1.5". Attached picture...
Thank you for the reply. I'm just wondering why locus with genotypes are "0/0" is called as a SV? So I must filter these sites manually before downstream analysis.
Hi Alex， Thanks for the quick reply. I used agora-vertebrate, and all genomes are chr-level. About outgroup, do you mean I’ d better use N1 rather than N0 as the...
Hi Alex, Thank you very much for the quick reply. I have tried "Agora-generic", and it shows a similar result. Do you mean that AGORA could not infer the exact...