Ryo Kurosawa

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Results 6 comments of Ryo Kurosawa

RuntimeError: Triton Error [CUDA]: invalid argument by run_dnabert2.sh

Here are my installed packages. (dnabert2) shiro@GTUNE:~/DNABERT_2/finetune$ pip list Package Version ------------------------------- ----------------- absl-py 1.0.0 accelerate 0.22.0 anndata 0.7.6 antlr4-python3-runtime 4.9.3 appdirs 1.4.4 astor 0.8.1 astunparse 1.6.3 autograd 1.4 autograd-gamma...

RuntimeError: Triton Error [CUDA]: invalid argument by run_dnabert2.sh

Here is my GPU implementation. (dnabert2) shiro@GTUNE:~$ nvidia-smi -L GPU 0: NVIDIA GeForce RTX 3070 Laptop GPU (UUID: GPU-776edd0d-aef5-ab3a-3750-32bfa854fecf) (dnabert2) shiro@GTUNE:~$ /usr/local/cuda/bin/nvcc --version nvcc: NVIDIA (R) Cuda compiler driver Copyright...

RuntimeError: Triton Error [CUDA]: invalid argument by run_dnabert2.sh

I just gave up..... Sorry.

I failed to reproduce SpliceAI training based on the source code.

Thank you very much for such an informative solution. Do I have to add the bath normalization both within the Resblocks and outside of them? I mean whether I have...

I failed to reproduce SpliceAI training based on the source code.

Thank you. I will try the script below. I just added a bachnorm layer after the cropping and before the last convolution layer. ``` def SpliceAI(L, W, AR): # L:...

I failed to reproduce SpliceAI training based on the source code.

I am sorry, but I got almost same result even after I added a batch normalization. Are there something wrong with the model structure yet? ``` $ python train_model.py 2000...