Shawn Higdon

icon indicating a website link https://shigdon.github.io icon indicating an email [email protected]

icon location Stockholm, Sweden icon location Comparative Microbial Genomics && Microbiome Research

Results 2 issues of Shawn Higdon

[question] Can I run ariba tool with all databases in one go?

1 comment

Hello! I've setup Bactopia 2.2.0 on my institute HPC. In a previous run with Bactopia about a year ago, I was able to provide a path to a pre-configured ariba...

question
v4

bioconda::prokka environment error

1 comment

Hello, I was attempting BACTpipe runs on ctmr-gandalf with a test set of 2 isolate pe-fastq samples when unexpectedly the system encountered an error during the Prokka module. The Git...