sherlyn

``` from upsetplot import generate_counts example = generate_counts() example from upsetplot import plot plot(example) # doctest: +SKIP ``` Running this example code gives the following error: `AttributeError: module 'matplotlib.cbook' has...

running checkm2 on a large number of genomes

3

Hi I have ~1 million of isolate genomes and I wanted to run checkm2 to assess their completeness and contamination. I came across #67 and I was wondering what is...

Hi, I encountered a strange case - when I give woltka the path to a specific samfile, the output table does not label the column with sample name: e.g. I...

Program hangs when clustering 1.9 million genomes

2

Hi, I am running clust-greedy on 1.9 million genomes and program hangs after 1 day, with no output. Curious if this is a known issue/if there is any troubleshooting that...

diamond hangs at Deallocating buffers...

4

hey, i have a diamond blastp job of an faa file of 24,195 entries against the uniref90 database. The job has been running for days but it seems like 0...

getting normalized quartet score

1

Hi, I’ve been trying to obtain quartet scores from individual gene trees against the species tree provided by Qiyun’s team, but I’m running into an issue where the scores don’t...