Robert Sheridan

@averyniceday @n1zea144 We have just been informed by @zhx828 that this functionality is arriving soon in oncoKB. I'm not sure if there is backend / importer work needed for this...

@zhx828 gave the go-ahead today after some testing, so this has been deployed.

A full scan of all files in the repo shows that the only module which has files containing the string "mapper.dtd" is persistence/persistence-mybatis ... the mybatis mapper files are xml...

I have added a fix for the compile bug (a typo in ImportGenePanelProfileMap.java) Now I am going through and eliminating (12) code smells. However, I also found references to the...

Code included as of this date looks good. Still needed before merging: - [ ] Updates to validateData.py and associated unit tests (and input data files such as core/src/test/scripts/test_data/data_structural_variants_exon_not_in_transcript.txt and...

Hello @karissawhiting. We are looking into why some genetic profiles which are of type structural variant (meaning that the molecularAlterationType is STRUCTURAL_VARIANT) have a stable id which ends in "xx_fusion"....

Also, we will test the api endpoint /structural-variant/fetch and see if it fails to work when the stable id of the molecular profile ends with "*_fusion" or something other than...

In an effort to clean up this repository, we would like to close this PR. If this PR needs to remain open, please let us know.

This bug is verified. Essentially, the controller mapping/routing is mistaking the slash in the parameter text to be division ( a path parameter split ). We will look into the...

cc: @ritikakundra @rmadupuri