Mikhail Schelkunov
Mikhail Schelkunov
I would like not to filter reads based on the number of "N" letters. To do this, I set "--n_base_limit=1000". However, fastp exits with the following error: > ERROR: N...
Contigs with zero coverage are not listed in mosdepth.summary.txt. I think it will be logical if they are listed there too, but with "0" in their mean coverage column. Using...
Is it possible to use Winnowmap to find overlaps between long reads, equivalent to "ava-ont" and "ava-pb" options of Minimap2? If not, do you plan to add this feature in...
Dear Dr. Li @lh3 What are, in your opinion, the main disadvantages of the algorithm of Miniasm compared to algorithms of more modern assemblers like Flye or Hifiasm? Best wishes,...
Since the author of OrthoFinder considers hierarchical orthogroups more accurate than traditional orthogroups (and calls the Orthogroups/Orthogroups.tsv file "deprecated"), wouldn't it be better to provide phylogenetic trees in the "Gene_Trees"...
I do the following analysis: I have a complete list of genes from a modern genome. Also, I have a complete list of genes from an ancestor of this species...
In the preprint about Miniprot (https://arxiv.org/abs/2210.08052) the author claims that it is usually more accurate than MetaEuk. Do you agree?
When I make a new post, more than 5 tags are allowed. However, if I want to edit that post (for example, if I find a typo), the website doesn't...
Hi. First, thank you for making and maintaining Biostars. I noticed that sometimes post preview works incorrectly. For example, when I want to add an empty line. As far as...
When running "fast_circ.py denovo" from the latest version of CIRCexplorer2, I encountered the following error: ``` Traceback (most recent call last): File "/mnt/lustre/shelkmike/Work/Tools/Anaconda/bin/fast_circ.py", line 8, in sys.exit(main()) File "/mnt/lustre/shelkmike/Work/Tools/Anaconda/lib/python3.9/site-packages/circ2/fast_circ.py", line...