shawpa
shawpa
I am also trying to update to the new version of methylSig and ran into the same "issue" as Stephanie above. I was using the old window size of 200...
As an update to what I previously posted, I let the calculation proceed with the window size 200 option and it finally finished. I don't have an exact time of...
This might be a very long post but I am just trying to be thorough and make sure I didn't make a mistake a long the way. I found a...
I am sorry that my example is not clear. I am going to run it with the exact same parameters and filters. Please let me know if there is any...
As an update, I ran my data with local information. Unfortunately, I feel like my results were worse because it showed that almost 1/2 my sites were significant using FDR...
Do you have any updates on this issue?
Thank you I really appreciate you and your team looking into this for me. Annie
It seems like the --clock is most similar to what I am doing because I have UMIs on both ends. I have no "fixed" bases so that part of the...
I just got my data and I want to confirm how the RID would need to be formatted so that the current `deduplicate_bismark` would work properly. An example of the...
This is all taken care of. We wrote an internal script to deal with trimming that puts it in the format bismark needs for the rest of the pipeline.