Sharvari Narendra issues

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                                            Sharvari Narendra

ComBat-seq + DESeq2 / WGCNA Or DESeq2 (batch as covariate) / ComBat + WGCNA

Hi, I am using ComBat-seq to remove batch effects from my dataset, and then running DESeq2 on the same. I was wondering if I could use the same data, after...

Inconsistencies between silva taxonomy and kraken2 classification

Hello! I recently ran kraken2 on my sample with a pre-built 16S Silva refseq index (138) given here : https://benlangmead.github.io/aws-indexes/k2. The report classifies Holozoa as D, even though it belongs...