shaln

Error installing harmony in R

4

Hello. I am having problems installing harmony and I get the following error. I updated my R by downloading the pkg from CRAN and then manually re-installing all the packages...

Lasso tool or option to rotate UMAP

3

Hello, I was wondering if there is a lasso tool available instead of the rectangular cell selection tool? Or perhaps an option to rotate the UMAP so the cells of...

Where to run scDblFinder in SCT workflow

1

Hi, I wanted to double-check where I should run scDblFinder in my workflow (Seurat v5). For context, I have 4 conditions, with 3, 3, 2 and 2 samples each (total...

Python and R versions of package giving different results

1

Hi, I wanted to first and foremost express my appreciation for this fantastic package! I am trying to apply the TF activity inference functions on my 10X scRNA-seq data. For...