Shakti Kumar

Hi all, I am Shakti Kumar from THSTI India working on H.pylori whole genome analysis. I want to compare a cagPAI of a reference chromosome with my lab isolated H.pylori...

memory error with -R parameter

6

Dear Sir, I have run ragoo with -R parameter by executing as ragoo.py contigs.fasta reference.fasta -R short reads -T sr -C -g 111. It run well but it showed memory...

installation error in R 3.6.3

1

Hi jbisanz , I want to run MicrobeR. I tried to install by following command as mentioned in file:///home/adapt/MicrobeR/index.html. I am installing it in R 3.6.3 version. library(devtools) install_github("jbisanz/MicrobeR") I...

nanopolish call-methylation showing Segmentation fault (core dumped)

4

Dear jts, I want to find methylation in nanopore raw data. I have a computer that has 64GB RAM, 18TB HDD and AMD® Ryzen 9 7950x 16-core processor × 32....