shachafl

Same problem running the command: python -m pip install hdbscan on ubuntu 20.04.5 (WSL 2) and fresh venv of python3.8.10 after upgrading pip setuptools wheel to their latest versions. To...

@berl @johnfmarkham I have looked into it (forked and fixed versioneer) but Starfish can't support python 3.12 because of dependency issues (numba, etc). Once all the main dependencies support python...

@berl I hit a "wall" when running further tests: $ make fast-test Most of the errors are related to "jsonschema.exceptions._RefResolutionError:

Almost. I get the following error when generating html files with Sphinx: $ make docs-html reading sources... [100%] user_guide/working_with_starfish_outputs/index Warning, treated as error: Failed guarded type import with ImportError("cannot import...

Hey @berl, Can you help review or find a reviewer to merge this PR? Many thanks in advance.

@berl thanks for reviewing this. This was a much deeper "rabbit hole" than intended. Regarding your items: 1) a bug fix for phase_cross_correlation() was issued in scikit-image 0.19 (https://scikit-image.org/docs/stable/release_notes/release_0.19.html). This...

This PR closes: #2001 #2000 #1999 #1996 #1995 #1994 #1993 #1992 #1991 #1990 #1989

@joshmoore can you please assist with this issue?

No. I had difficulties solving the previous bug with jsonschema and was hoping someone more knowledgeable would carry the baton for this one.

@rocketeer1998 there is an open PR #2009 that addresses this and needs to be reviewed and merged into the master branch. For now you can either: 1) For scikit-image 0.21,...