Stefano Ghignone
Stefano Ghignone
Dear Nikyle, I'm trying to build a customized version of you Dokerfile, using an updated version of MPICH, the 3.3 (released 21-Nov-2018) instead of the version you are using (3.2)....
Hi again, first of all, this package is amazing! I'm dealing with heat_tree_matrix on data obtained with calc_diff_abund_deseq2; what should I do on the diff_table in order to keep in...
Dear Grunwaldlab, how is it possible to set a main title to the heat_tree_matrix output? If I set a Title as in heat_tree, this is repeated multiple times for each...
In a ggplot plot based on whole world map, I'd like to place a geom_point (with size proportional to a variable) at a coordinate representing the 'center' of a selected...
What's the meaning of the error message I get with some DOI I'm working with, e.g. `GetBibEntryWithDOI(doi = "10.1016/j.jflm.2021.102223") ` `GetBibEntryWithDOI(doi = "10.1111/1462-2920.15688")` for both I get: `Error in substring(u,...
Dear Chris, I'm wondering whether It's possible to provide MITObim with multiple seeds (say cox1 and nad6). With former v. 1.8, I tried to put both genes in same reference...
I'm trying to use gff_to_gtf.py to convert Potato genome v.4.03 annotation (http://solanaceae.plantbiology.msu.edu/pgsc_download.shtml; precisely, this file: http://solanaceae.plantbiology.msu.edu/data/PGSC_DM_V403_genes.gff.zip) in gft ,and I'm getting this: > ~$ python scripts/GFFtools-GX/gff_to_gtf.py PGSC_DM_V403_genes.gff > PGSC_DM_V403_genes.gtf >...
HI Jeremy, given a multiuser environment on a machine running singularity, I would like to give the possibility to each user to manage their own RStudio . is this possible?...
Hello, we are quite new to GBrowse tracks customization, and we are wondering whether it might be possible to highlight individual and specific genes with different colors, once an annotation...
Hi! Has anyone managed to install SpiecEasi in a conda environment? Can you tell specification of your environment? thanks S.-