Paweł Sztromwasser

Thank you for the answer @julesjacobsen . Indeed, I can see them in the HTML output. So TSV output has only a subset of annotation columns present in HTML?

I have been trying it out attracted by the possibility of annotating variants with the REMM score. Looked at the tsv first, because it was easier to filter the variants...

@julesjacobsen annotating with REMM wasn't the sole purpose. Also wanted to try it out on a few undiagnosed WGS samples where we're looking for some new clues. I agree that...

Thank you. We'll wait with the update then until you have released this new version. On Tue, May 19, 2020 at 10:11 AM Keiran Raine wrote: > Although performance enhancements...

The project is run at http://zawlab.home.amu.edu.pl On Tue, May 19, 2020 at 12:09 PM Keiran Raine wrote: > Would you mind providing information as to your project/institute? > > —...

We use an HPC cluster and save results to a shared filesystem. The queuing system occasionally kills and reschedules jobs due to other, higher priority tasks. A relatively simple workaround...

Hi Keiran, I am sorry for the delay in communication. We haven't been able to locate logs from the run that failed. I will try to reproduce this running the...

I found a job that had been killed and resumed without cleanup (unfortunately cgpwgs v2.0.1, not 2.1.0). Error exit statuses came from Caveman and Pindel. Caveman ------------ ``` $> cat...

Hi @arangrhie Good to know that the current release is here to stay. I am wondering if we could also expect it becoming the successor of GRCh38 in the coming...

I assume in the same way GRCh37 and 38 co-exist in many databases. But one will be the 'default' choice for majority of human genome research and I have been...