Sebastian Schönherr issues

Repositories
Issues
Comments

Results 6 issues of


                                            Sebastian Schönherr

Move BaseAnnotation to genepi-annotate

Checkboxes always have value "true" when submitting jobs from the command line

Add check if phenotype / covariate columns are set

enhancement

Add effect prediction step

- E.g. using http://pcingola.github.io/SnpEff/

enhancement

Support genotyped array data in VCF format

- Currently genotyped array data must be provided in plink (bim/bed/fam) format. Support for VCF would be simplify the usage with data from MIS.

enhancement

nextflow.config required in my nf-test directory

This is my nf-test.config: ``` config { testsDir "tests" workDir ".nf-test" profile "development" } ``` When executing my tests, the following error message appears. ``` Error: Test config file 'tests/nextflow.config'not...