Scott Ouellette

Consistent salmon quant segfault

17

**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?** `salmon` **Describe the bug** Running `salmon quant` through my SLURM cluster consistently segfaults. I've attempted runs on...

Ex: Run a workflow in Galaxy that generates a `.bam` output. Galaxy automatically generates a `.bai` file associated with this `.bam` to run IGV etc. For my use case I...

Correct support for Django ADMINS setting

3

See occurances here: https://github.com/parklab/refinery-platform/search?q=ADMINS&type=Code&utf8=%E2%9C%93 ### Observed behavior This setting and its usages may not work properly with more than one Admin set. ### Expected behavior This setting and its usages...

Be able to save the state of a visualization tool?

7

I believe there was talk about being able to save the state of a visualization tool to be able to share one's findings??? Assuming that this means there should be...

Inactive User Accounts Displayed in Public Group Members List

3

* Specific code commit: 8f071da33e45f263fc6f6d8f1fd43686a7949a81 * Version of the web browser and OS: N/A * Environment where the error occurred: beta.stemcellcommons.org ### Steps to reproduce 1. Navigate to https://beta.stemcellcommons.org/collaboration/#/bd359b17-ae44-424a-9d5b-d549e093919b/ ###...

Upgrade to Django 1.9

2

https://docs.djangoproject.com/en/dev/releases/1.9/ https://docs.djangoproject.com/en/dev/internals/deprecation/#deprecation-removed-in-1-9 https://www.djangoproject.com/download/#supported-versions Depends on: #2614, #2618 Deprecations: * django_extensions: Django 1.8 features a native UUIDField, this UUIDField will be removed after Django 1.7 becomes unsupported (#2592) * Automatic syncing...

Large ISATabs/data sets can crash the site

4

* Specific code commit: c2b604771352702d94901998828ee25027546c63 * Version of the web browser and OS: `Chrome/macOS` * Environment where the error occurred: AWS ### Steps to reproduce: Please list all the actions...