Science Peak

Hi, @vadimnazarov Thanks for considering the feature request. [trust4_result.zip](https://github.com/immunomind/immunarch/files/4957169/trust4_result.zip)

@Alexander230 Thanks for adding the feature. I tested the new feature, and found that the automatical detection of the clonotyping tool label the trust4 as vdjtools. Perhaps there are more...

Hi, @vadimnazarov I am also working on bulk-RNA-seq data to find T cells from tumor samples. To me it is usual to have a mixcr result file that has only...

Hi, @vadimnazarov I see the challenge. The context is that we are studying the tumor infiltrating lymphocytes in the tumor tissues using bulk RNA-seq Fastq files. The upstream program is...

> After the new release of GDC made on March 29, 2022 the `GDCDownload()` function still works but the `GDCprepare()` function gives an error when the query is for RNA-Seq...

The default directory for the downloaded files are GDCdata/xxx/xxx/xxx, which is not an absolute path in the file system, though it is a long path. To download things, a true...

I saw the usage statement like this in the perl script. usage: trust-airr.pl trust_report.tsv trust_annot.fa [--format simplerep|cdr3|barcoderep]> trust_airr.tsv Could you please update the readme file or the trust-airr.pl file so...

Cool. I am curious about that I can not see a cdr3 column in the airr-format output. I only see cdr1 and cdr2 column. I am not very familar with...

Thanks for your great explanation.

Hi, I manully run the trust-airr.pl with --format cdr3. I don't know why the result table has much more rows than the table derived from the default --format simplerep that...