Mark Schultz

Thanks for the very useful program. Can you please add support for bz2 files? Thanks!

classify: thread count exceeds number of processors

2

Hi, Thanks for the program. When I run Kraken as part of a `python3 ruffus` version `2.6.3` pipeline, I get `classify: thread count exceeds number of processors`. The individual command...

layout not working for chrome, safari, firefox; scrolling feature request

3

Great program! However, when I try to layout my data, the MDS plot falls underneath the pangenome plot.  Also, when we have a...

Hi, Thanks for the package. I'm using PyVCF to parse out some VCFs from snpEff. It's a simple task, reading in some text (i.e., the vcf) and building a table...

Thanks for the ClusterPicker software. We are using it as part of our Hepatitis A Virus infection cluster detection pipeline (https://github.com/schultzm/HAVIC). In using it, we are starting to notice the...

Hi Samantha Lycett (Cluster Picker): [email protected] Manon Ragonnet: [email protected] in the user manual are no longer available

feature request: parse iqtree format

7

Hi, In `iqtree`, it is possible to perform multiple tests of branch support, each one being assigned to the same branch delimited by `/`. As far as I can tell,...