Sateesh_Peri
Sateesh_Peri
@mgalland can you share your 'units.tsv' file and also the log generated by snakemake to see exactly where it is failing
@mgalland Also the pipeline comes with sample data that is located in the '.test.' hidden folder. https://github.com/snakemake-workflows/ngs-test-data/tree/89c605ca51bcabd8d7bf128d233c714e91c6b32a
ok lets wait for https://github.com/nf-core/test-datasets/pull/492 to be merged now
you might have to test locally first after the recent merge
from your local run log `Read taxonomy from metamaps_db/taxonomy` looks like your process might need `/taxonomy` added to `--DB metamaps_db` - > `--DB metamaps_db/taxonomy` just a thought
@Emiller88 any tips on how to fix this?
Can i suggest an enhancement via incorporation of MultiQC tool (http://multiqc.info/) to summarize QC results from many samples into one file for easy viewing.
I recently started Python programming and have no JAVA background, so it would be a time-consuming task for me too. But, If you like, I can ask around to see...
hi @pditommaso here is a [gitpod](https://gitpod.io/#https://github.com/CDCgov/mycosnp-nf) to replicate my setup. `nextflow run main.nf -profile docker,test` after launch and you will see the error after configs are printed to terminal
@pditommaso here is the link to repo https://github.com/CDCgov/mycosnp-nf