Stephen A. Ramsey
Stephen A. Ramsey
Sorry for the (very terse) request, I will provide a bit more context. Our specific use-case is programmatically mapping an ICD-11 code for a rare/mendelian disease to an OMIM identifier....
My setup: - macOS 10.14.6 - python 3.7.4 - ontobio 2.1.2 - networkx 2.2
tagging @cmungall and @deepakunni3
Thanks, @dougli1sqrd and @deepakunni3. Is the current behavior of `ontobio` on this example input (i.e., not showing any edge in the resulting ontobio object, corresponding to the datatype property) expected?
Thanks for your replies, @deepakunni3 and @dougli1sqrd! Great, a node property (in the ontobio object model) would be ideal for us. Any sense of how light or heavy a lift...
Hi ontobio team, just checking back on this-- do you think this is a feasible fix? Would the fix be in owltools or in ontobio?
> a few things going on here. Looks like something unrelated to ontobio for ttl->rdfxml conversion? both owltools and robot are wrappers to the owlapi, but they may use different...
Would using `ObjectWriter.writeValue(output_stream, object_value)` make sense? https://stackoverflow.com/questions/34657372/java-lang-outofmemoryerror-java-heap-space-with-json-conversion Forgive me if this doesn't make sense; my Java is pretty rusty.
It think it is important to maintain alignment between TRAPI JSON and other KG representations, such as KGX TSV. I think it would be unfortunate if there were type semantics...
The person on my team who will be point person for understanding and implementing the spec from a RTX KG2 standpoint will be Erica Wood. I will send them a...