Sarah Alamdari

icon location cambridge, ma icon location chemical engineer gone rogue

Results 4 comments of Sarah Alamdari

Non-canonical amino acid sequence seen

Since our model is trained over additional amino acid codes (JOUBZX), it's possible to observe them at inference in your generations. These are; U = selenocysteine O = pyrrolysine B...

msa_oa_ar_maxsub not recognized

Thanks for catching the typo in the example command - fixed in commit 683b08d I installed in a clean environment and clean machine, and it does appear to download. Perhaps...

tag device='cuda' not working

Can you specify which script/function you are running? And I can help solve this

Question about generating IDRs from EvoDiff-Seq

I don't think this is the correct dataset (the folder should contain alignments not single fasta files) - I have messaged the authors to get the IDR alignments uploaded to...