sarah872

Hey there. I am also running into this issue. I installed augustus over brew (current AUGUSTUS (3.2.2), and I am getting the same error (`PP::Profile: Error parsing pattern file"PF00012.13.prfl", line...

Thanks for keeping me updated. I actually have access to Linux on a grid server, but not as admin - so installation is restricted to my user.

thanks I did. Unfortunately I am getting an error when doing this step: `make CC=gcc-7 CXX=g++-7 BAMTOOLS_CC=clang BAMTOOLS_CXX=clang++ BAMTOOLS=/usr/local/bin/bamtools` bam2hints.cc:16:10: fatal error: 'api/BamReader.h' file not found #include ^~~~~~~~~~~~~~~~~ 1 error...

Thank you! However, I would in fact require that my entire chromosome is covered. This is the behaviour with the uncommented lines: ``` chr1 2415000 2420000 83309 chr1 2420000 2425000...

Thanks for having a look! I'm attaching a bam-file, I gzipped it so that github let's me upload it. I mapped my reads (a subset) onto a 29,966 bp long...

I am using `pyani 0.2.7` on `CentOS Linux 7 (Core)` with `mummer` `4.0.0beta2`. This is the command I am running: `average_nucleotide_identity.py -i test/ -o out --workers 3` There are 16...

I see! I will try it with `mummer` 3 then. For me, specifying _a_ number of cores is something that makes a program flexible for running it on e.g. a...

If I execute this using my file, I get many files that have the right axis length, but there is one gene over the whole contig that is called `source`...

I want to plot all the protein coding genes that are in one contig, so as an output I have as many plots as contigs, each plot with the respective...

ahahah ok 👍 I am working a lot with metagenomic data, so I have incomplete draft genome, that means many scaffolds/contigs that represent one genome, but are not connected to...