Sam Horsfield

Hi @markhend, thanks for such a speedy response. I am already linking directly to the seq lib directory (I changed it in the example just for readability). I am also...

@markhend unfortunately I run into the same issue as you ``` /tmp/ccBJNODw.o: In function `main': foo.c:(.text+0xa): undefined reference to `foo' collect2: error: ld returned 1 exit status ```

@markhend compiling with the ```-c``` flag gets rid of the multiple definition errors, however ```foo``` is an object and not an executable ``` $ seqc build -o foo.o foo.seq $...

## Review checklist for @samhorsfield96 ### Conflict of interest - [x] I confirm that I have read the [JOSS conflict of interest (COI) policy](https://github.com/openjournals/joss/blob/master/COI.md) and that: I have no COIs...

@lpantano there was an issue generating the paper pdf. Is there a way of accessing the newest draft? I see there is one available on biorxiv, but I am unsure...

@cagret Is there a pdf version of the paper available? I saw one on biorxiv but I'm unsure if this is the latest version. However, the paper.md on the redoak...

> i updated the git repo : https://gite.lirmm.fr/doccy/RedOak/-/tree/master/RedOak-paper Unfortunately the in-text referencing hasn't worked. I shall review the latest biorxiv version.

@cagret Thank you for writing a great piece of software. The algorithm itself and the explanation of how it works is excellent, and the benchmarking is comprehensive and pushes Redoak...

Hi @lpantano, the summary of my review is in the comments above (https://github.com/openjournals/joss-reviews/issues/4363#issuecomment-1142333731), apologies if I didn't make this clear when I added the comment. I've made sure my checklist...

Hi both, I believe this shape is due to a high proportion of k-mer mismatches even at the lowest values of k, resulting in distance calculation errors. I would suggest...