Sameet Mehta

icon location New Haven, CT icon location I am a bioinformatics scientist. I currently work as Bioinformatics Scientist at Yale Center for Genome Analysis. I write end-to-end pipelines.

Results 7 comments of Sameet Mehta

Error in FUN(X[[i]], ...)

I am getting the same error. When I tried to call the `calculate.crossfit.models` from the commadline, I could not find that function. So I manually imported the function, and now...

higher resolution nucpos.bed.gz is empty

Hi @AliciaSchep , I tried doing what was suggested here. Briefly, I deleted the `.pyxbld` from my home directory. Then i used `python tests.py`. It forced re-compile of the `C`...

`nucpos` files are empty

Hi @AliciaSchep, I looked at Issue #55, and tried the following. Briefly, I deleted the `.pyxbld` from my home directory. Then i used `python tests.py`. It forced re-compile of the...

Branch point identification

Yes, this will be very useful to have, and will make PHATE ultimately more useful.

memory issue

As a followup, what are general memory requirements for such a conversion?

Remote SSH: Can not connect to host requiring certificate for authentication (error resolving authority)

This issue still persists with me. I get a different error though: ``` Failed to connect to the remote extension host server (Error: All configured authentication methods failed) ``` I...

RunAzimuth() Error: Error in `reference[["SCT"]]`: ! 'SCT' not found in this Seurat object

I ran into exact same issue. I do not want to downgrade to `5.0.2`, is there any other solution. I was able to downgrade to `5.2.1`, and that seems to...