salma1601

FIX caching of afni allineate when out_matrix is specified

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## Summary Fixes #3140 . ## List of changes proposed in this PR (pull-request) added `name_template`, `name_source` and `kepp_extension` to `out_matrix` ## Acknowledgment - [X] \(Mandatory\) I acknowledge that this...

FIX Ants N4BiasFieldCorrection rescale_intensities bug

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## Summary Addresses #3138 in the short term. ## List of changes proposed in this PR (pull-request) removed `use_default=True` for `rescale_intensities` input ## Acknowledgment - [X] \(Mandatory\) I acknowledge that...

installing SAMRI

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Dear SAMRI experts, I am trying to install SAMRI. I installed gentoo in my home, installed the overlay science in `/home/salma/gentoo/var/db/repos` and tried to emerge samri but I am getting...

merge plot_inverse_covariance_connectome and plot_multi_subject_connectome

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The connectivity example `plot_inverse_covariance_connectome` demos `sklearn.covariance.GraphLassoCV` on ADHD data with MSDL atlas. The example`plot_multi_subject_connectome` compares the GraphLasso to `nilearn.connectome.GroupSparseCovarianceCV` also for ADHD/MSDL. Morevover, we have the same comparison on simulated...

sklearn's GraphLassoCV or ConnectivityMeasure(cov_estimator=GraphLassoCV) ?

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Many examples fit `sklearn.covariance.GraphLassoCV`. We can rely on `ConnectivityMeasure` instead. One drawback is that we will not be able to assess the `GraphLasso` attributes, such as the `alpha_`.