salma1601

OK I understand better. Actually I have miniconda3 binaries added to my `PATH` in my `~/.bashrc`. So I unset my `PYTHONPATH` removed from `PATH` all paths pointing outside gentoo directory...

@TheChymera here are the outputs ``` python2.7 -c "import nibabel; print(nibabel.__version__, nibabel.__file__)"``` >Traceback (most recent call last): File "", line 1, in File "/home/salma/gentoo/usr/lib64/python2.7/site-packages/nibabel/__init__.py", line 62, in from . import...

Now it is failing because of my `DCMTK` outside prefix ! [build.log](https://github.com/IBT-FMI/SAMRI/files/3934789/build.log)

@TheChymera I think you did fix it! Now failing for ANTs :) [build.log](https://github.com/IBT-FMI/SAMRI/files/3935960/build.log)

@oesteban @satra Unfortunately the ANTS default (at least for my version compiled 22 december 2019) is rescale_intensities=True, so actually it will make a difference ...

:+1:

Ok. What I can do for all examples (except ICA and Dictionary learning, cause I am a stranger to that) is to synthesize in a _table_ what they demo piece...

> However, in the long run, I think that I would like to try to have all examples running with the cobre data. You would keep ADHD only to demo...

I did a table with the connectivity examples, except those ICA and dictionary learning related. I hope it is useful.  I added a secondary teaching box to group demoed...

So from what I read I have some little changes suggestions 1- consolidate functional connectivity section **3.1. Extracting times series to build a functional connectome**. For me we jump too...