saassli21

Command line options

1

I blastp on my data and it's really much faster than I exprected. i used some filters based on the documentation in "Wiki" section ( https://github.com/bbuchfink/diamond/wiki/3.-Command-line-options ) in order to...

I can't install porechop using conda I already have my conda env activated but when I run : **conda install -c bioconda porechop** I have this error : Collecting package...

error with MicrobiomeStat

5

**Hello, Thank you for you interactivity in advance I've been using the same script since December 2023, and I've tested it on my dataset. However, after changing my PC and...

The 'group1' or 'group2' column in the 'daa_results_df' data frame contains more than one group. Please filter each to contain only one group.

6

Hello @cafferychen777 , I have 2 datasets , I tested the script that is in #65 on the first and it worked nicely because when I print this command (daa_sub_method_results_df1...

errobar interpretation

5

Hello, I'm new to picrust2 output analysis. I'm wondering how to analyze this error bar, especially the log2 fold change section and the associated p-value!. Could please give me an...

ggpicrust2 fails with PICRUSt 2.6.2 output but works with 2.5.2

4

Hello, Thank you for this tool !! I usually use ggpicrust2 with the output file pred_metagenome_unstrat.tsv.gz generated by PICRUSt version 2.5.2. Recently, I tried running the same ggpicrust2 script on...