QS Zhu

hicNormalize Behavior of operations on cool file

1

When hicNormalize normalizes cool, it seems use weight in cool for balance first, which results in most of the bin values becoming 0 when using the '-sz 1.0 --normalize smallest'...

Why does ggradar not allow display of actual data values

ilus WGS -f -n WES -C ilus_sys.yaml -I input.txt -O 3.WES-isoform/ --interval ~/ann/Uniq.hg38/hg38.uniq-isoform.interval.bed It seems that with the use of interval files, each interval region is run separately to get...

the first line of script/ice is: #!/home/nservant/Apps/conda/envs/hicpro-3.1.0/bin/python Causes error: ice: /home/nservant/Apps/conda/envs/hicpro-3.1.0/bin/python: Interpreter error: No such file or directory.