ryshi

Unexpected error during processing

2

Hi there, I tried to use METAL to process a single file, but during the processing, I got errors like duplicated detected, only the first occurrence is used. But I...

Hello, I am trying to run the program with a publicly available GWAS summary statistics and my PLINK binary file set with the following command: ``` Rscript $PRSice/PRSice.R --dir ....

Highly inflated p-value in Tractor GWAS

3

Hi, I tried to run Tractor on 1765 subjects. I followed all the steps, and two population group AFR and EUR. However, I found high inflation in the output GWAS,...

Run Tractor for 3 ancestry groups but the final output only has one ancestry p-value

1

Hello, I am trying to run the ancestry specific GWAS for EUR, AFR, and EAS using the 1000 Genome WGS reference. I have separated the steps of infer local ancestry...