stix
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ryanlayer
Structural Variant Index
Hi, I was wondering why insertions where left out in the paper describing STIX (_Searching thousands of genomes to classify somatic and novel structural variants using STIX_) Also, why weren't...
I used `excord` to create the `bed.gz` file and then run `giggle index`. But I am getting the following error `giggle: Error reading file "A94_Exp5_6/cache.0.idx": End of file` The command...
Hello Ryan, I am getting following while running stix. stix: Could not open data file 'normals_b/cache.2045.dat'.: Too many open files here is the command i use stix/bin/stix -i normals_b -d...
Does STIX support genotyping of translocations? If so could an example be provided in the README? If not, what would be involved to support translocations and would you be willing...
Hi Ryan, It would be great to have more input file format options, e.g: BED format Thanks Meenal
Hi Ryan, for the stix output in the info field. Can we get a parameter for how many samples are supporting that variant? I see you have the stix_zero and...
It would be nice to implement a feature similar to what one can do with `bcftools query`. So instead of getting raw output formatted like the index ped file, we...
Dear Ryan, This pull reqeust contains the demo data for STIX long read paper. The instruction of how to use those demo data can be found at Example(long-read) in the...
