Error while running stix

[KeyTals]

Hello Ryan,

I am getting following while running stix.

stix: Could not open data file 'normals_b/cache.2045.dat'.: Too many open files

here is the command i use

stix/bin/stix -i normals_b -d normals.ped.db -s 500 -f Tonly.vcf.gz

Also this is how i creared ped.db

stix/bin/stix -i normals_b -p normals.ped -d normals.ped.db -c 3

PED database normals.ped.db with 10 rows created from normals.ped.

and my ped looks something like

Sample Sex Alt_file normal_S1 0 normal_S1.bed.gz

Could you please help to diagnose the issue.

Thanks, Keyur

[ryanlayer]

You need to allow more open files. Try ulimit -Sn 16384

On Wed, Apr 20, 2022 at 9:49 AM KeyTals @.***> wrote:

Hello Ryan,

I am getting following while running stix.

stix: Could not open data file 'normals_b/cache.2045.dat'.: Too many open files

here is the command i use

stix/bin/stix -i normals_b -d normals.ped.db -s 500 -f Tonly.vcf.gz

Also this is how i creared ped.db

stix/bin/stix -i normals_b -p normals.ped -d normals.ped.db -c 3

PED database normals.ped.db with 10 rows created from normals.ped.

and my ped looks something like

Sample Sex Alt_file normal_S1 0 normal_S1.bed.gz

Could you please help to diagnose the issue.

Thanks, Keyur

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