Ron Williams

Error: out of shared memory on 'large' rails migration

15

I get this error when running a migration that does a bit of ETL with ~30k records. I don't know if this issue belongs here of with the java jdbc....

[bug] WARN: There's no process matching config selector:

1

**Description** When using the AWS profile to run bactopia via NF Tower/Batch we get warnings that there are no processes that match some of the profile config selectors. output sample...

I'm maintaining an updated gem version here https://github.com/rwilliams/theine2. Would love to integrate the main gem.

These methods no longer exist in Rails 6 maybe earlier. ``` ActionDispatch::Reloader.cleanup! ActionDispatch::Reloader.prepare! ``` I think [this](https://github.com/rwilliams/theine/commit/22a18c9c3a05eb3af71404cb30c28d8836cddd13#diff-81322e9bf979709dd1b1e06b5a6c617d) does the same thing?

Apply labels from pivotal stories to trello cards. They don't seem to be copied now.

Rocket League crashing when Applying tw color to Psyonix Wheels

4

If I attempt to preview the Psyonix Wheels when tw is selected as wheel color Rocket League Crashes. It was also crash if I have Psyonix Wheels equipped and attempt...

Handle cloud storage include and exclude sample files.

1

This change allows include and exclude files to be access from cloud storage as well as locally.

[question] Include samples file location

2

In the example below does include.txt need to be a local file or can it point to cloud storage like s3? Thanks! ``` bactopia --wf pangenome \ --bactopia /path/to/your/bactopia/results \...

[question] Schema files for Snippy and Pangenome

2

Are there Nextflow schemas for these workflows? I'm attempting to run them through Nextflow Tower and I'd like to point to a schema file to population all the options in...

[bug] Subsequent runs of Abricate do not overwrite the individual outputs under tools -> abricate

2

**Description** When running abricate on the same bactopia output the individual sample output files are not overwritten. **Steps to Reproduce** This first, looser, example gives many hits from VFDB and...