rwhetten

It seems likely that the deeper the coverage, the better the read correction will work, but I'm working with a large genome (>20 Gb haploid complement) so RAM is a...

I'm working with a large dataset of multiple files of PacBio CLR reads, and at the moment filtlong is running on a combined file containing all the data (267 Gb)....

adjustable parameters with --load-alignments

3

Thanks for a great tool! I'm interested in optimizing assembly results by testing a range of parameter settings, using a single $prefix.alignments.gz file as input with the `--load-aligments` option. Is...

core dump at final step

3

I'm encountering an error using Quickmerge installed from Bioconda in September of this year, in the stderr output: ``` # COMPLETETIME # SPACE 4: FINISHING DATA Abort (core dumped) ```...

Thanks for a very interesting tool! I'm working with a very large (>20 Gb) draft genome assembly, so the default index size of 4 Gb for minimap2 requires 6 passes...

I'm getting the same error as issue #32 with a copy of the repository cloned today, in the same system background as described in issue #32 - Ubuntu 20.04, nvcc...

I am trying to run kgwasflow on an Ubuntu 22.04 system, and I get the error message `/lib/x86_64-linux-gnu/libgfortran.so.3: version 'GFORTRAN_1.4'not found`. The libgfortran3 library cannot be installed on Ubuntu 22.04...

I'm interested in testing polyGembler as a method of grouping short-read contigs into linkage groups or chromosomes, without trying to order the contigs within chromosomes into linkage maps. I have...