Raul Alcantara
Raul Alcantara
### Description of feature Hello, I've been running some custom pipeline in AWS and found it useful to adopt the nf-core practice of dumping useful pipeline information into the pipeline_info...
It would be nice to have some custom text to help identify each run (in the runs view). At the moment it can be a bit difficult to relate runs...
Hi, I'm using Tower (@ tower.nf ) to monitor several analysis running on our cluster. They are being launched manually with LSF in the cluster. I have around 30 -...
We have a series of high depth WES experiments that are showing very high contamination. Pileup file looks reasonable with values between 1 - 600. I suspect the PC calculation...
removed not null enforcement for ip columns in postgres tables to allow ip and instance ids to be populated
I've managed to get things working with the quickstart. However when I look at runnin job I see that the sections for instance id or private ip are not being...
### Description of the bug In the nf-core documentation for the sample sheet there is an error that sometimes a column is referred to as : flowcell and in other...
### Description of the bug Seems like the File methods in NfcoreTemplate.groovy don't like s3: locations. I had to change them to use Nextflow's file method. I think that nf-core...
When looping trough a BAM file with eachoverlap I get an error if the selected interval intersects past the last read of the BAM file. ## Expected Behavior samtools view...
Hello, having a custom ordering of chromosomes seems to be quite painful at the moment. I've had to overwrite/extend many of the methods from GenomicFeatures and Indexes as they have...